PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003324m
Common NameCISIN_1g002489mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 831aa    MW: 90560.8 Da    PI: 7.4051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003324mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-18281380198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  
  orange1.1g003324m 281 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-P 370
                        89**************************555566778***************9989999999***9.********************766.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  orange1.1g003324m 371 EGKLVMGFRK 380
                        7777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-31277387IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-19278380IPR015300DNA-binding pseudobarrel domain
CDDcd100175.47E-22279380No hitNo description
PROSITE profilePS5086311.293281382IPR003340B3 DNA binding domain
PfamPF023626.9E-16281380IPR003340B3 DNA binding domain
SMARTSM010191.0E-19281382IPR003340B3 DNA binding domain
PROSITE profilePS5105013.781509559IPR011124Zinc finger, CW-type
PfamPF074967.6E-11514556IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MLLVGGVVSH ARVHCGCITS VHAFTLLDAG GIECMTCARK NVLVAPTPSW PPSLFYQTPF  60
PERIKDLSVK NWTQLAGSGP VPWRQAPSLF NSSIPQPELR PRLPYEVDLS AGIDRINASE  120
RLSVPSLEKR KLEDFSERLM NGGLKSGSRD IPENANAGSN CDMQPSSCLN KPQQSSTLKD  180
DSSTPHFGLA VSYASPSETN SQIGVSGSHL RPVVQPPLVK QFHGNLPNGA DSLGETQVRN  240
GRPRVDARGR SQLLPRYWPR FTDQDLQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK  300
KCAEAYFPPI SQPEGLPLKV QDSKGKEWIF QFRFWPNNNS RMYVLEGVTP CIQNMQLQAG  360
DIVTFSRLEP EGKLVMGFRK ASSASASDQD NEANKAGTGI PANGHAELAD PSSWSKVDKS  420
GYIATEALGA KSSISRKRKN TTLGSKSKRL KIENEDVIEL KLTWEEAQGL LRPPPNNVPS  480
VVVIEGYEFE EYEDAPILGK PTIFATDNVG EKIQWVQCED CSKWRKVPAN ARLPSKWTCS  540
GNLWDPERSV CSVAQELREE QLEDLIAPNN PASSKKLKAA KQEPDCVEAL EGLDTLANLA  600
ILGEGEGLTA SSQATTKHPR HRPGCSCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFHTL  660
MLRREKKQSE KDAETSRKKQ QQQKLPVPEK SADDDPLSCS KTGNNSPNEK KVVSEGSDDD  720
SSRIKSSTSP FKGQIDLNIQ PEREEELSPG SDSGSMIRLL QDATEKYLRQ QRLSSSGVNT  780
SSVDNEGLQG GVTGEKISNG ITLDGSHQDT DEDHHGSLSV KASASISATG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1528039013123DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1436450KRKNTTLGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-134KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467888.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G7Y80.0A0A067G7Y8_CITSI; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-162HSI2-like 1